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Menhaden not key forage for other Gulf species, study says

August 19, 2025 — A study by Mississippi-based researchers found that menhaden are not a primary food source for Gulf of Mexico predator species like red drum, summer flounder, and spotted sea trout.

“The study provides a comprehensive understanding of the Gulf food web and charts the trophic interactions that structure it,” according to a summary from the University of Southern Mississippi. “The findings have fishery management implications for several of the species evaluated in the study. Most notably, Gulf menhaden was not found to be a primary food source for any of the predator species studied.”

The question of menhaden’s role in the Gulf ecosystem is a perennial, hot-button issue in fisheries management. The impact of the region’s commercial menhaden fleet is routinely challenged by recreational and other user groups.

The project, funded by the Science Center for Marine Fisheries (SCEMFIS) combined the latest in stable isotope analysis “and an extensive meta-analysis of hundreds of published stomach content studies dating back to the 1950s” from Gulf fisheries research.

Read the full article at the National Fisherman

New Study Challenges Long-Held Beliefs About Menhaden and the Gulf Food Web

August 11, 2025 — One of the most important questions in the Gulf is also, surprisingly, one that hasn’t had a detailed answer: what exactly do predator fish eat? Species like red drum, southern flounder, and spotted seatrout are important to both the Gulf ecosystem and the recreational fishing economy, and knowing what they eat is key to managing them successfully.

A new study from the University of Southern Mississippi is helping answer that question with one of the most comprehensive investigations of predator diets to date.

Rethinking the Role of Gulf Menhaden

One of the headline findings concerns another important species: Gulf menhaden. Often viewed as the key food source for many of these predators, the study finds they may not be as central to these predator diets as previously thought.

While menhaden are part of the mix, the study found no predator species examined relied on them as a primary food source. Instead, predator diets were found to be incredibly varied and opportunistic, depending on what prey is available at different times and in different places.

Read the full article at NOLA.com

Mississippi study of predator fish diets could alter fisheries management strategies for key commercial species

July 30, 2025 — A new study conducted by the University of Southern Mississippi has revealed more details of the diets of common predators in the Gulf of Mexico – currently referred to as the Gulf of America by the U.S. government – and the findings and methodology could impact fisheries management of key commercial species.

The study, funded by the Science Center for Marine Fisheries (SCEMFIS), combined both extensive existing data and new stable isotope analysis to determine what common predators in the Gulf eat. The study – which was summarized in a video on the SCEMFIS YouTube channel – looked at more than 30 different predator species and used hundreds of published stomach content studies dating back to the 1950s.

Read the full article at SeafoodSource

What Do Gulf Predators Really Eat? Groundbreaking Study Finds Menhaden Play a Smaller Role Than Expected

July 30, 2025 — The following was released by the Science Center for Marine Fisheries:

What do some of the Gulf of America’s most iconic predator fish really eat? Scientists at the University of Southern Mississippi are moving closer to answering that question with a groundbreaking new study that delivers some of the most detailed insights to date on the Gulf food web. To do this they’ve combined two powerful approaches: cutting-edge stable isotope analysis and an extensive meta-analysis of hundreds of published stomach content studies dating back to the 1950s.

Despite the ecological and commercial importance of species like red drum, summer flounder, and spotted sea trout, our understanding of their interactions with prey species has been limited. This new research challenges long-standing assumptions, most notably the idea that Gulf menhaden is a primary food source for these key predators.

Funded by the Science Center for Marine Fisheries (SCEMFIS), a member of the National Science Foundation’s Industry–University Cooperative Research Center program, the study provides a comprehensive understanding of the Gulf food web and charts the trophic interactions that structure it. The findings have fishery management implications for several of the species evaluated in the study. Most notably, Gulf menhaden was not found to be a primary food source for any of the predator species studied.

“We looked at some 30-plus predator species, many of them exceptionally well-studied. We did not find any single species where we would say Gulf menhaden was the most important fish in their diet,” said Dr. Robert Leaf, one of the authors of the study and Director of the School of Ocean Science and Engineering at the University of Southern Mississippi.

“When you look at the information that we have, what we find is that Gulf menhaden are a prey item—certainly they play a role in the trophic dynamics of predators—but not to the extent of other prey items, which are also very important—in fact, more important,” Dr. Leaf continued.

Traditionally, determining what predators eat has been limited to analyzing samples of their stomach contents. This provides information about what predators have eaten recently, but it offers only a limited snapshot and does not reveal long-term dietary patterns or prey availability. To bridge this gap, the study incorporates new data, developed from analyzing stable isotope levels taken from predator tissue samples.

Stable isotopes are heavier forms of elements, like carbon and nitrogen, that are present in all species and at all points in the food web. Because these isotopes do not decay, they accumulate in predator species in different proportions, depending on the diet of the predator. By analyzing the levels of stable carbon and nitrogen isotopes in predator species, the study authors are able to determine what types of diet sources the predators generally rely on, as well as what trophic level they predominantly feed on. This technique offers a much broader view of predator diets than stomach content analysis alone.

“When an animal eats a prey item, there is a differential uptake in the carbon and the nitrogen,” said Dr. Kevin Dillon, another author of the study and an Associate Professor at the University of Southern Mississippi’s Gulf Coast Research Laboratory. “So we can measure those small differences to try to piece this together and look at each organism’s trophic position within that food web. So we’re able to tell from a fish’s isotopic signature whether the fish was eating phytoplankton or if it was eating another fish that had eaten phytoplankton.”

The study pairs the data from the stable isotope analysis with a meta-analysis of hundreds of previously published stomach content databases dating back to the 1950s. Integrating the two data sources into a single modeling framework provides clearer insight into the role of low-trophic-level species in the Gulf. The scientists found that species like red drum, summer flounder, and spotted sea trout are general, opportunistic feeders that do not rely solely on a single prey species. Instead, their diets vary depending on factors such as seasons, prey availability, and other climatic conditions.

Species like Gulf menhaden are important parts of the diet, but there is no single prey species that these predators overwhelmingly rely on. There is no “most important” prey species in the Gulf.

While this study focused on the Gulf ecosystem and food web, its insights may have broader relevance for similar species and predator–prey dynamics in other regions. On the East Coast, for instance, Atlantic menhaden play a role comparable to their Gulf counterparts, serving as forage for many similar predators—including striped bass, summer flounder, weakfish, and bluefish—which are also common in the northern Gulf of America. While additional research is needed, the Mid-Atlantic ecosystem likely exhibits similarly complex trophic dynamics and variability in predator diets.

8-Minute Video Brings the Science to Life
An eight-minute YouTube video released alongside the study features Dr. Robert Leaf and Dr. Kevin Dillon explaining how their team used stable isotope analysis and decades of stomach content data to map the Gulf’s complex food web. Viewers will see the inside of the university’s isotope lab, close-up footage of the specialized equipment used to analyze predator tissue samples, and field scenes from the Mississippi coast where the research team collected specimens.

Dr. Leaf and Dr. Dillon walk through how their findings overturn long-held assumptions about the role of Gulf menhaden in predator diets—revealing instead a diverse, seasonally shifting prey base that includes crabs, shrimp, anchovies, and Atlantic croaker. They demonstrate how isotopic tracers such as carbon-13 and nitrogen-15 help identify what predators eat over time and how high they sit in the food web.

Also featured is graduate student Calvin Chee, who offers a field-level perspective and personal observations about the Gulf’s biodiversity. Together, the scientists describe how combining isotope data with traditional stomach content analysis provides a more complete, long-term view of predator–prey interactions.

About the Methodology
Around the world, scientists have increasingly turned to this emerging method of combining stable isotope analysis (SIA) and stomach content analysis (SCA) to better understand what animals eat. Stomach content analysis provides a direct but short-term snapshot of recently ingested prey, while stable isotope ratios in muscle tissue reflect assimilated diet over longer time frames. When used together, the two methods offer complementary perspectives on trophic relationships across seasons, habitats, and life stages.

This dual approach has now been used successfully in ecosystems around the globe from tropical rivers to polar seas, including nine species in the Eastern Adriatic Sea, coral reef groupers in Australia’s Great Barrier Reef, and Nile perch in East Africa’s Lake Victoria.

No such combined study has been conducted involving menhaden species in U.S. waters—until now.

Note on Naming: The body of water traditionally known as the Gulf of Mexico has been renamed “Gulf of America” within U.S. federal usage, following Executive Order 14172 issued earlier this year. As of early 2025, U.S. agencies, including the Coast Guard, and major platforms like Google Maps, Apple Maps, etc. (for U.S. users) have adopted the new name in compliance.

Southern Miss Student’s Passion for Fisheries Hopes to Bring Change to Coastal Communities

November 11, 2024 — The coastal lifestyle runs through the veins of Molly Spencer, a School of Ocean Science and Engineering (SOSE) student at The University of Southern Mississippi (USM). Her passion for fisheries has sparked her to create dynamic solutions for coastal communities and federal agencies, allowing her to land an internship at the National Oceanic and Atmospheric Administration (NOAA) Northeast Fisheries Science Center in Woods Hole, Mass.

In October 2023, Spencer packed her bags for a six-month internship to survey the Atlantic Surfclam stock and climate change impact on its migrating population. Spencer explained that changes in water temperature greatly affect the surfclam population over time while also impacting commercial and governmental agencies. The shifting range of the Atlantic Surfclam is important information to the local fishers and the stock assessors that produce their yearly quotas.

“This research is important to me because it has a direct correlation to real problems occurring in our coastal oceans right now. This work has the potential to be put into the hands of policymakers and those of fisheries influence. I’m hoping my research will be able to make changes for the better. I’m hoping to bridge the science with coastal fishers,” said Spencer.

Spencer is excited to participate in a first-ever research manuscript detailing studies done on assessing a federal stock assessment on the future abundance of a commercially valuable species. The goal is to inform top U.S. shellfish fisheries on changes in stock sustainability resulting from climate change.

Read the full article at University of Southern Mississippi

Marine Fisheries Internships Pave Way for Future USM Scientists

June 25, 2024 — A collaborative effort between The University of Southern Mississippi (USM) and the Science Center for Marine Fisheries (SCEMFIS) provides significant research opportunities that benefit the Mississippi Gulf Coast’s blue economy. Student internships represent one reward from the impactful partnership.

Molly Spencer and Catherine Wilhelm – USM graduate students in the School of Ocean Science and Engineering (SOSE) – were paired with the National Science Foundation (NSF) Internship Program that prepares the next generation of fisheries scientists in response to climate change, the blue economy, and coastal impacts.

Spencer’s research work with the program focused on the effects of climate-inducing warming on commercial imports such as Atlantic surfclam and ocean quahog in the Mid-Atlantic Bight. Analyzing the effects of increasing temperatures on habitats has sparked her passion for fisheries at the Northeast Fisheries Science Center (NEFSC) in Woods Hole, Mass.

“The internship with NEFSC gave me a greater sense of just how important it is for scientists and industry partners to work together,” Spencer said. “Lots of changes are occurring in our oceans right now, and I’m fortunate to have had the opportunity to participate in research that was both scientifically rewarding as well as impactful to the coastal community.”

Read the full article at the University of Southern Mississippi

USM’s Dr. Robert Leaf Dedicates His Work to the Blue Economy

September 26, 2023 — Dr. Robert Leaf, Interim Director of the University of Southern Mississippi (USM) School of Ocean Science and Engineering (SOSE) works to enhance a healthy ecosystem for the Gulf of Mexico blue economy through research and collaborations with the State of Mississippi and throughout the Gulf of Mexico.

Leaf is an associate professor and joined SOSE in 2012. He teaches graduate-level courses on quantitative fisheries management, statistics, and data analysis and computer programming. Leaf oversees all the undergraduate and graduate programs for the SOSE, along with a certification program for Uncrewed Maritime Systems (UMS).

“We think of fisheries as an experiment where the resilience of the stock to exploitation can be evaluated every year. Studying this can allow us to maximize the opportunities for harvest while ensuring sustainability” said Leaf.

Leaf is excited about the undergraduate and graduate degrees offered by the SOSE, especially the Marine Biology program, which is rapidly growing.

Read the full article at University of Southern Mississippi

Study finds existing forage fish management is working

July 9, 2021 — Efforts to ratchet down fishing effort on species like herring and menhaden in the name of “extra precautionary management” in most cases are unlikely to bring additional benefits for stocks of predator species that eat them, according to a new study.

“Our results indicate that predator productivity was rarely influenced by the abundance of their forage fish prey,” wrote authors Christopher Free of the University of California-Santa Barbara, Olaf Jensen of the University of Wisconsin-Madison, Ray Hilborn of the University of Washington. “Only 6 predator populations (13 percent of the total) were positively influenced by increasing prey abundance and the model exhibited high power to detect prey influences when they existed,” according to their paper titled “Evaluating impacts of forage fish abundance on marine predators,” originally published in the journal Conservation Biology.

“These results suggest that additional limitation of forage fish harvest to levels well below sustainable yields would rarely result in detectable increases in marine predator populations.”

The findings were released July 6 through the Science Center for Marine Fisheries, a cooperative effort to improve sustainability of fisheries and reduce uncertainty in biomass estimates with work by university partners led with the University of Southern Mississippi Virginia Institute of Marine Science, College of William and Mary, as academic sites.

“Our work suggests that the sustainable limits that we already employ are sufficient for maintaining forage fish abundance above the thresholds that are necessary for their predators,” Free of UC Santa Barbara in a statement describing the findings. “Predators are highly mobile, they have high diet flexibility, and they can go and look for forage fish in places where they’re doing well, switch species for species that are doing well, and have often evolved to breed in places where there’s high and stable forage fish abundance.”

Read the full story at National Fisherman

New Study Finds Strong Currents Off Nantucket Prevent Development of Stable, Biologically Diverse Benthic Communities

February 22, 2021 — The following was released by the Science Center for Marine Fisheries (SCEMFIS):

Complex ocean environments, full of features such as cobble, rocks, and boulders, are usually home to a diversity of marine life; as a result, fisheries managers have often sought to preserve these areas from outside interference. But one such area off the coast of Nantucket may be a significant exception to this rule, according to a new study from the Science Center for Marine Fisheries (SCEMFIS).

The study, from Eric Powell, Jeremy Timbs, and Kelsey Kuykendall of the University of Southern Mississippi and Roger Mann and M. Chase Long of the Virginia Institute of Marine Science, analyzes survey data from the Nantucket Shoals area of the Great South Channel in the Atlantic, an area of considerable substrate complexity and home to the Great South Channel Habitat Management Area (HMA). But the study found that, due to the area’s strong currents and seafloor activity, much of the faunal diversity expected from substate complexity has failed to develop.

Specifically, the study found few examples of the kind of charismatic marine life—such as tunicates, sponges and anemones—that usually attach themselves to prominent features like boulders and rocks in habitats where they occur. The study attributes this to the high-energy currents that frequently run through the area, as well as the sand on the seafloor regularly scouring the rocks as a result of the currents. The absence of mussels attached to hard bottom features, and the presence of barnacle scars where barnacles have been eroded off the rocks, show clear evidence of the rigor of the benthic environment that minimizes the use of these substrates by attached bottom creatures.

According to the study, the tidal activity and strong currents “minimize the importance of cobbles, rocks, boulders, and shells in community structure in some subtidal high-energy regimes, defying expectations from their contribution to substrate complexity.”

“You’d expect the type of environment you see in Nantucket Shoals to support a significant amount of life on its rocks and bottom features, but that’s just not the case here,” said Dr. Eric Powell, one of the authors of the study. “These findings show that we need to consider the whole range of factors when determining which habitats are most likely to support biodiversity.

”The findings are significant for future management of the Great SouthChannel area. Much of the region has been part of a HMA since 2018, which prohibits bottom-tending fishing gear. It is also home to important fishing grounds for surfclams, and is one of the most resilient areas for surfclam habitat. Surfclam fishermen have lost access to these grounds since the HMA went into full effect.

Most notably, the Nantucket Shoals area within the HMA was critical for smaller clam vessels fishing out of Massachusetts; several surfclam companies caught up to 90 percent of their harvest from the area. Since it was first established, members of the surfclam industry have argued that this habitat area does not contain enough complex habitat to justify the number of restrictions in place, especially considering the cost to the industry. The study indicates that the area may not be a good candidate for habitat protection.

“It’s important that conservation efforts target areas that are most likely to benefit them, especially if these efforts would interfere with important fishing grounds,” said Monte Rome a member of the SCEMFIS IAB. “This study helps us better identify areas that do not particularly benefit conservation efforts.”

Read the full release here

Gulf fisheries suffer major losses; recovery underway

September 6, 2019 — After devastating commercial fishery losses in Louisiana and Mississippi following freshwater intrusion from the Bonnet Carre Spillway opening earlier this year, officials are working on recovery efforts.

On 6 September, the Mississippi Department of Marine Resources (MDMR) and the University of Southern Mississippi Gulf Coast Research Laboratory released around 90,000 juvenile spotted seatrout (speckled trout) into Hancock County waters.

Read the full story at Seafood Source

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